Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0790196.10b with 3 members (nuclear pore complex protein nup88)

Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata / Vertebrata / Gnathostomata /

... /

Euteleostomi / Sarcopterygii / Tetrapoda / Amniota /

Mammalia /

Completeness score: 0.04

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This HOG has 24 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0790196	136	292	nuclear pore complex protein nup88
2	HOG:E0790196.10a	55	115	nuclear pore complex protein nup88
3	HOG:E0790196.9b	19	12	nuclear pore complex protein nup88
4	HOG:E0790196.9a	5	5	nuclear pore complex protein nup88
5	HOG:E0790196.8a	5	3	nuclear pore complex protein nup88
6	HOG:E0790196.7a	3	3	nuclear pore complex protein nup88
7	HOG:E0790196.2a	3	2	nuclear pore complex protein nup88
8	HOG:E0790196.8b	2	1	nuclear pore complex protein nup88
9	HOG:E0790196.7b	2	2	nuclear pore complex protein nup88
10	HOG:E0790196.6b	2	2	nuclear pore complex protein nup88
11	HOG:E0790196.6a	2	4	nuclear pore complex protein nup88
12	HOG:E0790196.1a	2	1	nuclear pore complex protein nup88
13	HOG:E0650980	2	2	Nuclear pore complex protein Nup88
14	HOG:E0790196.6a.1b	1	1	nuclear pore complex protein nup88
15	HOG:E0790196.6a.1a	1	1	nuclear pore complex protein nup88
16	HOG:E0790196.5b	1	1	nuclear pore complex protein nup88
17	HOG:E0790196.5a	1	1	nuclear pore complex protein nup88
18	HOG:E0790196.4b	1	1	nuclear pore complex protein nup88
19	HOG:E0790196.4a	1	1	nuclear pore complex protein nup88
20	HOG:E0790196.3b	1	3	nuclear pore complex protein nup88
21	HOG:E0790196.3a	1	1	nuclear pore complex protein nup88
22	HOG:E0790196.10a.2b	1	1	nuclear pore complex protein nup88
23	HOG:E0790196.10a.2a	1	1	nuclear pore complex protein nup88
24	HOG:E0776685	1	3	-

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